Code
library(knitr)
library(targets)
library(MiscMetabar)
here::i_am("analysis/01_bioinformatics.qmd")
source(here::here("R/styles.R"))
source(here::here("R/functions.R"))Where we see the pipeline processes
Date: December 3, 2024
library(knitr)
library(targets)
library(MiscMetabar)
here::i_am("analysis/01_bioinformatics.qmd")
source(here::here("R/styles.R"))
source(here::here("R/functions.R"))log_data <- autometric::log_read(
here::here("data/data_final/autometric_log.txt"),
units_time = "hours",
units_memory = "gigabytes"
)
log_data |>
filter(!grepl("conclude:", phase)) |>
filter(!grepl("prepare:", phase)) |>
filter(!grepl("__DEFAULT__", phase)) |>
ggplot(aes(x = time, y = reorder(phase, desc(time)), color = resident)) +
geom_line(aes(linewidth = cpu)) +
scale_color_viridis_b("Memory (Gb)", end = 0.9, direction = -1) +
theme_idest() +
xlab("Time (in hours)") +
ylab("")You may want to select another targets such as d_asv or d_vs_mumu for example.
d_pq <- clean_pq(tar_read("d_vs", store=here::here("_targets/")))Cleaning suppress 0 taxa and 26 samples.
summary_plot_pq(d_pq)Cleaning suppress 0 taxa and 0 samples.
tar_glimpse(script=here::here("_targets.R"), targets_only = TRUE, callr_arguments = list(show = FALSE))tar_meta(store=here::here("_targets/"), targets_only = TRUE) |>
dplyr::mutate(time = paste0(seconds %/% 3600,":",seconds %/% 60,":",floor(seconds %% 60)))|>
dplyr::select(name, seconds, bytes, format, time) |>
dplyr::mutate(Gb=round(bytes/10^9,2)) |>
dplyr::arrange(desc(seconds), desc(bytes)) |>
kable()| name | seconds | bytes | format | time | Gb |
|---|---|---|---|---|---|
| d_asv | 15175.810 | 1121258 | rds | 4:252:55 | 0.00 |
| tax_tab | 5874.178 | 810117 | rds | 1:97:54 | 0.00 |
| ddF | 1706.088 | 134739992 | qs | 0:28:26 | 0.13 |
| ddR | 1416.051 | 146350364 | qs | 0:23:36 | 0.15 |
| filtered | 642.999 | 166 | rds | 0:10:42 | 0.00 |
| quality_raw_seq | 577.204 | 19103 | rds | 0:9:37 | 0.00 |
| quality_seq_wo_primers | 502.534 | 18972 | rds | 0:8:22 | 0.00 |
| cutadapt | 325.437 | 69632 | file | 0:5:25 | 0.00 |
| quality_seq_filtered_trimmed_FW | 255.565 | 11354 | rds | 0:4:15 | 0.00 |
| quality_seq_filtered_trimmed_REV | 255.029 | 11354 | rds | 0:4:15 | 0.00 |
| err_fs | 241.244 | 21768 | qs | 0:4:1 | 0.00 |
| err_rs | 231.799 | 24521 | qs | 0:3:51 | 0.00 |
| derep_rs | 211.368 | 2780860228 | qs | 0:3:31 | 2.78 |
| derep_fs | 183.569 | 1764068735 | qs | 0:3:3 | 1.76 |
| track_sequences_samples_clusters | 112.782 | 422 | rds | 0:1:52 | 0.00 |
| merged_seq | 101.611 | 1440062 | qs | 0:1:41 | 0.00 |
| track_by_samples | 94.841 | 9016 | rds | 0:1:34 | 0.00 |
| bioinfo_report | 47.120 | 44 | rds | 0:0:47 | 0.00 |
| seqtab_wo_chimera | 15.211 | 818071 | rds | 0:0:15 | 0.00 |
| d_vs | 5.692 | 918040 | rds | 0:0:5 | 0.00 |
| d_vs_mumu | 4.358 | 902295 | rds | 0:0:4 | 0.00 |
| d_vs_mumu_rarefy | 0.349 | 868910 | rds | 0:0:0 | 0.00 |
| seq_tab_Pairs | 0.259 | 960195 | rds | 0:0:0 | 0.00 |
| data_phyloseq | 0.091 | 1039190 | rds | 0:0:0 | 0.00 |
| s_d | 0.045 | 10846 | rds | 0:0:0 | 0.00 |
| seqtab | 0.011 | 811557 | rds | 0:0:0 | 0.00 |
| asv_tab | 0.011 | 811434 | rds | 0:0:0 | 0.00 |
| data_raw | 0.010 | 5380 | rds | 0:0:0 | 0.00 |
| sam_tab | 0.004 | 3577 | rds | 0:0:0 | 0.00 |
| fastq_files_folder | 0.002 | 45056 | file | 0:0:0 | 0.00 |
| file_sam_data_csv | 0.001 | 3858 | file | 0:0:0 | 0.00 |
| data_fnfs | 0.001 | 2763 | rds | 0:0:0 | 0.00 |
| samp_n_otu_table | 0.001 | 1996 | rds | 0:0:0 | 0.00 |
| file_refseq_taxo | 0.000 | 114270891 | file | 0:0:0 | 0.11 |
| data_fnrs | 0.000 | 2763 | rds | 0:0:0 | 0.00 |
d_pq <- tar_read("d_vs", store=here::here("_targets/"))The {targets} package is at the core of this project. Please read the intro of the user manual if you don’t know {targets}.
The {targets} package store … targets in a folder and can load (tar_load()) and read (tar_read) object from this folder.
DT::datatable(d_pq@sam_data)kable(tar_read(track_sequences_samples_clusters, store=here::here("_targets/")))| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| Raw Forward sequences | 18499235 | NA | 376 |
| Forward wo primers | 15727443 | NA | 376 |
| Forward sequences | 14291477 | 29893 | 360 |
| Paired sequences | 9954646 | 12434 | 360 |
| Paired sequences without chimera | 9634094 | 10441 | 360 |
| Paired sequences without chimera and longer than 200bp | 9599091 | 10281 | 360 |
| ASV denoising | 9599091 | 10281 | 360 |
| OTU after vsearch reclustering at 97% | 9599091 | 4521 | 360 |
| OTU vs after mumu cleaning algorithm | 9599091 | 4160 | 334 |
| OTU vs + mumu + rarefaction by sequencing depth | 594000 | 3522 | 297 |
tab_samp <- tar_read(track_by_samples, store=here::here("_targets/"))
for (li in names(tab_samp)) {
print(knitr::kable(tab_samp[[li]], caption = li, format="html"))
cat('\n<!-- -->\n\n')
}| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32631 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 32631 | 56 | 1 |
| OTU vs after mumu cleaning algorithm | 32631 | 55 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32870 | 143 | 1 |
| OTU after vsearch reclustering at 97% | 32870 | 129 | 1 |
| OTU vs after mumu cleaning algorithm | 32870 | 119 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 97 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31296 | 95 | 1 |
| OTU after vsearch reclustering at 97% | 31296 | 84 | 1 |
| OTU vs after mumu cleaning algorithm | 31296 | 79 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 68 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32509 | 133 | 1 |
| OTU after vsearch reclustering at 97% | 32509 | 115 | 1 |
| OTU vs after mumu cleaning algorithm | 32509 | 112 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 93 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44333 | 49 | 1 |
| OTU after vsearch reclustering at 97% | 44333 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 44333 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20956 | 51 | 1 |
| OTU after vsearch reclustering at 97% | 20956 | 42 | 1 |
| OTU vs after mumu cleaning algorithm | 20956 | 42 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34772 | 76 | 1 |
| OTU after vsearch reclustering at 97% | 34772 | 66 | 1 |
| OTU vs after mumu cleaning algorithm | 34772 | 65 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43814 | 115 | 1 |
| OTU after vsearch reclustering at 97% | 43814 | 98 | 1 |
| OTU vs after mumu cleaning algorithm | 43814 | 97 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 69 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29108 | 84 | 1 |
| OTU after vsearch reclustering at 97% | 29108 | 64 | 1 |
| OTU vs after mumu cleaning algorithm | 29108 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33900 | 105 | 1 |
| OTU after vsearch reclustering at 97% | 33900 | 88 | 1 |
| OTU vs after mumu cleaning algorithm | 33900 | 86 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 76 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40335 | 68 | 1 |
| OTU after vsearch reclustering at 97% | 40335 | 41 | 1 |
| OTU vs after mumu cleaning algorithm | 40335 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30435 | 57 | 1 |
| OTU after vsearch reclustering at 97% | 30435 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 30435 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 29 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38056 | 92 | 1 |
| OTU after vsearch reclustering at 97% | 38056 | 73 | 1 |
| OTU vs after mumu cleaning algorithm | 38056 | 73 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 60 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36140 | 103 | 1 |
| OTU after vsearch reclustering at 97% | 36140 | 92 | 1 |
| OTU vs after mumu cleaning algorithm | 36140 | 83 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 60 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26521 | 67 | 1 |
| OTU after vsearch reclustering at 97% | 26521 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 26521 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 46 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36571 | 110 | 1 |
| OTU after vsearch reclustering at 97% | 36571 | 84 | 1 |
| OTU vs after mumu cleaning algorithm | 36571 | 84 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 65 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27642 | 166 | 1 |
| OTU after vsearch reclustering at 97% | 27642 | 149 | 1 |
| OTU vs after mumu cleaning algorithm | 27642 | 147 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 129 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 73 | 2 | 1 |
| OTU after vsearch reclustering at 97% | 73 | 2 | 1 |
| OTU vs after mumu cleaning algorithm | 73 | 2 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39349 | 65 | 1 |
| OTU after vsearch reclustering at 97% | 39349 | 49 | 1 |
| OTU vs after mumu cleaning algorithm | 39349 | 49 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33694 | 127 | 1 |
| OTU after vsearch reclustering at 97% | 33694 | 113 | 1 |
| OTU vs after mumu cleaning algorithm | 33694 | 112 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 99 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39351 | 82 | 1 |
| OTU after vsearch reclustering at 97% | 39351 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 39351 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 50 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42550 | 75 | 1 |
| OTU after vsearch reclustering at 97% | 42550 | 45 | 1 |
| OTU vs after mumu cleaning algorithm | 42550 | 44 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 38 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28651 | 89 | 1 |
| OTU after vsearch reclustering at 97% | 28651 | 80 | 1 |
| OTU vs after mumu cleaning algorithm | 28651 | 79 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 71 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37520 | 121 | 1 |
| OTU after vsearch reclustering at 97% | 37520 | 103 | 1 |
| OTU vs after mumu cleaning algorithm | 37520 | 102 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 83 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 478 | 3 | 1 |
| OTU after vsearch reclustering at 97% | 478 | 3 | 1 |
| OTU vs after mumu cleaning algorithm | 478 | 3 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32968 | 123 | 1 |
| OTU after vsearch reclustering at 97% | 32968 | 105 | 1 |
| OTU vs after mumu cleaning algorithm | 32968 | 105 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 93 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 32 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 32 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33074 | 116 | 1 |
| OTU after vsearch reclustering at 97% | 33074 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 33074 | 89 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 80 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33501 | 109 | 1 |
| OTU after vsearch reclustering at 97% | 33501 | 74 | 1 |
| OTU vs after mumu cleaning algorithm | 33501 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26265 | 79 | 1 |
| OTU after vsearch reclustering at 97% | 26265 | 73 | 1 |
| OTU vs after mumu cleaning algorithm | 26265 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 64 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48076 | 67 | 1 |
| OTU after vsearch reclustering at 97% | 48076 | 61 | 1 |
| OTU vs after mumu cleaning algorithm | 48076 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 46 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21388 | 70 | 1 |
| OTU after vsearch reclustering at 97% | 21388 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 21388 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 54 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31892 | 9 | 1 |
| OTU after vsearch reclustering at 97% | 31892 | 6 | 1 |
| OTU vs after mumu cleaning algorithm | 31892 | 6 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 6 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31818 | 146 | 1 |
| OTU after vsearch reclustering at 97% | 31818 | 115 | 1 |
| OTU vs after mumu cleaning algorithm | 31818 | 112 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 97 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37039 | 59 | 1 |
| OTU after vsearch reclustering at 97% | 37039 | 53 | 1 |
| OTU vs after mumu cleaning algorithm | 37039 | 53 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33094 | 138 | 1 |
| OTU after vsearch reclustering at 97% | 33094 | 118 | 1 |
| OTU vs after mumu cleaning algorithm | 33094 | 116 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 102 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41737 | 162 | 1 |
| OTU after vsearch reclustering at 97% | 41737 | 128 | 1 |
| OTU vs after mumu cleaning algorithm | 41737 | 123 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 104 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27974 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 27974 | 71 | 1 |
| OTU vs after mumu cleaning algorithm | 27974 | 71 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 66 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 18158 | 89 | 1 |
| OTU after vsearch reclustering at 97% | 18158 | 86 | 1 |
| OTU vs after mumu cleaning algorithm | 18158 | 78 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 72 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51598 | 85 | 1 |
| OTU after vsearch reclustering at 97% | 51598 | 70 | 1 |
| OTU vs after mumu cleaning algorithm | 51598 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34880 | 90 | 1 |
| OTU after vsearch reclustering at 97% | 34880 | 78 | 1 |
| OTU vs after mumu cleaning algorithm | 34880 | 77 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 63 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33135 | 138 | 1 |
| OTU after vsearch reclustering at 97% | 33135 | 116 | 1 |
| OTU vs after mumu cleaning algorithm | 33135 | 116 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 95 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35668 | 139 | 1 |
| OTU after vsearch reclustering at 97% | 35668 | 128 | 1 |
| OTU vs after mumu cleaning algorithm | 35668 | 126 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 106 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 15084 | 85 | 1 |
| OTU after vsearch reclustering at 97% | 15084 | 75 | 1 |
| OTU vs after mumu cleaning algorithm | 15084 | 75 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 70 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20297 | 134 | 1 |
| OTU after vsearch reclustering at 97% | 20297 | 122 | 1 |
| OTU vs after mumu cleaning algorithm | 20297 | 118 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 109 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28977 | 106 | 1 |
| OTU after vsearch reclustering at 97% | 28977 | 86 | 1 |
| OTU vs after mumu cleaning algorithm | 28977 | 86 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 74 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30347 | 162 | 1 |
| OTU after vsearch reclustering at 97% | 30347 | 131 | 1 |
| OTU vs after mumu cleaning algorithm | 30347 | 121 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 106 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19459 | 93 | 1 |
| OTU after vsearch reclustering at 97% | 19459 | 85 | 1 |
| OTU vs after mumu cleaning algorithm | 19459 | 84 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 75 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 31 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 31 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26320 | 89 | 1 |
| OTU after vsearch reclustering at 97% | 26320 | 83 | 1 |
| OTU vs after mumu cleaning algorithm | 26320 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 73 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24659 | 102 | 1 |
| OTU after vsearch reclustering at 97% | 24659 | 99 | 1 |
| OTU vs after mumu cleaning algorithm | 24659 | 97 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 79 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 14794 | 69 | 1 |
| OTU after vsearch reclustering at 97% | 14794 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 14794 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 8759 | 35 | 1 |
| OTU after vsearch reclustering at 97% | 8759 | 27 | 1 |
| OTU vs after mumu cleaning algorithm | 8759 | 27 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21061 | 109 | 1 |
| OTU after vsearch reclustering at 97% | 21061 | 105 | 1 |
| OTU vs after mumu cleaning algorithm | 21061 | 103 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 95 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20468 | 112 | 1 |
| OTU after vsearch reclustering at 97% | 20468 | 104 | 1 |
| OTU vs after mumu cleaning algorithm | 20468 | 100 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 95 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38792 | 138 | 1 |
| OTU after vsearch reclustering at 97% | 38792 | 120 | 1 |
| OTU vs after mumu cleaning algorithm | 38792 | 119 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 98 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32604 | 149 | 1 |
| OTU after vsearch reclustering at 97% | 32604 | 130 | 1 |
| OTU vs after mumu cleaning algorithm | 32604 | 128 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 103 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30798 | 129 | 1 |
| OTU after vsearch reclustering at 97% | 30798 | 112 | 1 |
| OTU vs after mumu cleaning algorithm | 30798 | 110 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 93 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40710 | 150 | 1 |
| OTU after vsearch reclustering at 97% | 40710 | 128 | 1 |
| OTU vs after mumu cleaning algorithm | 40710 | 128 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 107 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33209 | 151 | 1 |
| OTU after vsearch reclustering at 97% | 33209 | 131 | 1 |
| OTU vs after mumu cleaning algorithm | 33209 | 130 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 108 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25660 | 149 | 1 |
| OTU after vsearch reclustering at 97% | 25660 | 134 | 1 |
| OTU vs after mumu cleaning algorithm | 25660 | 133 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 110 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39375 | 82 | 1 |
| OTU after vsearch reclustering at 97% | 39375 | 70 | 1 |
| OTU vs after mumu cleaning algorithm | 39375 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 62 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27998 | 71 | 1 |
| OTU after vsearch reclustering at 97% | 27998 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 27998 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 49 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44141 | 82 | 1 |
| OTU after vsearch reclustering at 97% | 44141 | 68 | 1 |
| OTU vs after mumu cleaning algorithm | 44141 | 67 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 50 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40252 | 95 | 1 |
| OTU after vsearch reclustering at 97% | 40252 | 72 | 1 |
| OTU vs after mumu cleaning algorithm | 40252 | 69 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 54 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36217 | 85 | 1 |
| OTU after vsearch reclustering at 97% | 36217 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 36217 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41441 | 95 | 1 |
| OTU after vsearch reclustering at 97% | 41441 | 88 | 1 |
| OTU vs after mumu cleaning algorithm | 41441 | 87 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 70 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31275 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 31275 | 78 | 1 |
| OTU vs after mumu cleaning algorithm | 31275 | 76 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28394 | 121 | 1 |
| OTU after vsearch reclustering at 97% | 28394 | 111 | 1 |
| OTU vs after mumu cleaning algorithm | 28394 | 110 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 90 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34063 | 86 | 1 |
| OTU after vsearch reclustering at 97% | 34063 | 63 | 1 |
| OTU vs after mumu cleaning algorithm | 34063 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 55 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 22942 | 61 | 1 |
| OTU after vsearch reclustering at 97% | 22942 | 48 | 1 |
| OTU vs after mumu cleaning algorithm | 22942 | 48 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36015 | 83 | 1 |
| OTU after vsearch reclustering at 97% | 36015 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 36015 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19800 | 114 | 1 |
| OTU after vsearch reclustering at 97% | 19800 | 97 | 1 |
| OTU vs after mumu cleaning algorithm | 19800 | 90 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 84 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34088 | 124 | 1 |
| OTU after vsearch reclustering at 97% | 34088 | 99 | 1 |
| OTU vs after mumu cleaning algorithm | 34088 | 95 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 81 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31586 | 135 | 1 |
| OTU after vsearch reclustering at 97% | 31586 | 116 | 1 |
| OTU vs after mumu cleaning algorithm | 31586 | 113 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 92 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27873 | 130 | 1 |
| OTU after vsearch reclustering at 97% | 27873 | 116 | 1 |
| OTU vs after mumu cleaning algorithm | 27873 | 114 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 100 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43110 | 162 | 1 |
| OTU after vsearch reclustering at 97% | 43110 | 134 | 1 |
| OTU vs after mumu cleaning algorithm | 43110 | 126 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 107 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29717 | 73 | 1 |
| OTU after vsearch reclustering at 97% | 29717 | 43 | 1 |
| OTU vs after mumu cleaning algorithm | 29717 | 41 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31134 | 104 | 1 |
| OTU after vsearch reclustering at 97% | 31134 | 88 | 1 |
| OTU vs after mumu cleaning algorithm | 31134 | 88 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 77 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28681 | 89 | 1 |
| OTU after vsearch reclustering at 97% | 28681 | 80 | 1 |
| OTU vs after mumu cleaning algorithm | 28681 | 80 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 66 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25914 | 97 | 1 |
| OTU after vsearch reclustering at 97% | 25914 | 87 | 1 |
| OTU vs after mumu cleaning algorithm | 25914 | 87 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 79 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 49371 | 118 | 1 |
| OTU after vsearch reclustering at 97% | 49371 | 99 | 1 |
| OTU vs after mumu cleaning algorithm | 49371 | 99 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 80 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 27 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 27 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38839 | 71 | 1 |
| OTU after vsearch reclustering at 97% | 38839 | 69 | 1 |
| OTU vs after mumu cleaning algorithm | 38839 | 69 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40735 | 158 | 1 |
| OTU after vsearch reclustering at 97% | 40735 | 131 | 1 |
| OTU vs after mumu cleaning algorithm | 40735 | 130 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 108 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1405 | 9 | 1 |
| OTU after vsearch reclustering at 97% | 1405 | 8 | 1 |
| OTU vs after mumu cleaning algorithm | 1405 | 8 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37745 | 130 | 1 |
| OTU after vsearch reclustering at 97% | 37745 | 104 | 1 |
| OTU vs after mumu cleaning algorithm | 37745 | 103 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 89 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31654 | 165 | 1 |
| OTU after vsearch reclustering at 97% | 31654 | 148 | 1 |
| OTU vs after mumu cleaning algorithm | 31654 | 144 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 128 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27159 | 130 | 1 |
| OTU after vsearch reclustering at 97% | 27159 | 113 | 1 |
| OTU vs after mumu cleaning algorithm | 27159 | 112 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 99 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35072 | 152 | 1 |
| OTU after vsearch reclustering at 97% | 35072 | 131 | 1 |
| OTU vs after mumu cleaning algorithm | 35072 | 130 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 110 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 54 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 54 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 54 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38870 | 108 | 1 |
| OTU after vsearch reclustering at 97% | 38870 | 70 | 1 |
| OTU vs after mumu cleaning algorithm | 38870 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 159 | 4 | 1 |
| OTU after vsearch reclustering at 97% | 159 | 4 | 1 |
| OTU vs after mumu cleaning algorithm | 159 | 4 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26246 | 65 | 1 |
| OTU after vsearch reclustering at 97% | 26246 | 55 | 1 |
| OTU vs after mumu cleaning algorithm | 26246 | 54 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24298 | 97 | 1 |
| OTU after vsearch reclustering at 97% | 24298 | 74 | 1 |
| OTU vs after mumu cleaning algorithm | 24298 | 71 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 61 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43360 | 124 | 1 |
| OTU after vsearch reclustering at 97% | 43360 | 84 | 1 |
| OTU vs after mumu cleaning algorithm | 43360 | 84 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 67 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 148 | 11 | 1 |
| OTU after vsearch reclustering at 97% | 148 | 11 | 1 |
| OTU vs after mumu cleaning algorithm | 148 | 11 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34057 | 143 | 1 |
| OTU after vsearch reclustering at 97% | 34057 | 107 | 1 |
| OTU vs after mumu cleaning algorithm | 34057 | 104 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 87 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39159 | 71 | 1 |
| OTU after vsearch reclustering at 97% | 39159 | 42 | 1 |
| OTU vs after mumu cleaning algorithm | 39159 | 42 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 35 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 2197 | 10 | 1 |
| OTU after vsearch reclustering at 97% | 2197 | 9 | 1 |
| OTU vs after mumu cleaning algorithm | 2197 | 9 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 9 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29987 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 29987 | 35 | 1 |
| OTU vs after mumu cleaning algorithm | 29987 | 35 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35913 | 108 | 1 |
| OTU after vsearch reclustering at 97% | 35913 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 35913 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 46 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38573 | 79 | 1 |
| OTU after vsearch reclustering at 97% | 38573 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 38573 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 45 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28037 | 59 | 1 |
| OTU after vsearch reclustering at 97% | 28037 | 48 | 1 |
| OTU vs after mumu cleaning algorithm | 28037 | 48 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27592 | 120 | 1 |
| OTU after vsearch reclustering at 97% | 27592 | 117 | 1 |
| OTU vs after mumu cleaning algorithm | 27592 | 117 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 105 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33801 | 144 | 1 |
| OTU after vsearch reclustering at 97% | 33801 | 134 | 1 |
| OTU vs after mumu cleaning algorithm | 33801 | 129 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 109 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28543 | 125 | 1 |
| OTU after vsearch reclustering at 97% | 28543 | 115 | 1 |
| OTU vs after mumu cleaning algorithm | 28543 | 109 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 97 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44927 | 14 | 1 |
| OTU after vsearch reclustering at 97% | 44927 | 10 | 1 |
| OTU vs after mumu cleaning algorithm | 44927 | 10 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 10 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 292 | 9 | 1 |
| OTU after vsearch reclustering at 97% | 292 | 9 | 1 |
| OTU vs after mumu cleaning algorithm | 292 | 9 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32535 | 27 | 1 |
| OTU after vsearch reclustering at 97% | 32535 | 17 | 1 |
| OTU vs after mumu cleaning algorithm | 32535 | 17 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 16 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30146 | 26 | 1 |
| OTU after vsearch reclustering at 97% | 30146 | 15 | 1 |
| OTU vs after mumu cleaning algorithm | 30146 | 15 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 14 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24269 | 69 | 1 |
| OTU after vsearch reclustering at 97% | 24269 | 63 | 1 |
| OTU vs after mumu cleaning algorithm | 24269 | 63 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28512 | 18 | 1 |
| OTU after vsearch reclustering at 97% | 28512 | 14 | 1 |
| OTU vs after mumu cleaning algorithm | 28512 | 14 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 14 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24793 | 75 | 1 |
| OTU after vsearch reclustering at 97% | 24793 | 70 | 1 |
| OTU vs after mumu cleaning algorithm | 24793 | 69 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 55 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39333 | 67 | 1 |
| OTU after vsearch reclustering at 97% | 39333 | 51 | 1 |
| OTU vs after mumu cleaning algorithm | 39333 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28102 | 64 | 1 |
| OTU after vsearch reclustering at 97% | 28102 | 55 | 1 |
| OTU vs after mumu cleaning algorithm | 28102 | 54 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 44 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28174 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 28174 | 55 | 1 |
| OTU vs after mumu cleaning algorithm | 28174 | 54 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33895 | 121 | 1 |
| OTU after vsearch reclustering at 97% | 33895 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 33895 | 88 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 77 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30082 | 72 | 1 |
| OTU after vsearch reclustering at 97% | 30082 | 71 | 1 |
| OTU vs after mumu cleaning algorithm | 30082 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 63 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40803 | 70 | 1 |
| OTU after vsearch reclustering at 97% | 40803 | 51 | 1 |
| OTU vs after mumu cleaning algorithm | 40803 | 51 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 33 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39874 | 131 | 1 |
| OTU after vsearch reclustering at 97% | 39874 | 116 | 1 |
| OTU vs after mumu cleaning algorithm | 39874 | 110 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 91 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 44643 | 146 | 1 |
| OTU after vsearch reclustering at 97% | 44643 | 133 | 1 |
| OTU vs after mumu cleaning algorithm | 44643 | 130 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 98 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37868 | 158 | 1 |
| OTU after vsearch reclustering at 97% | 37868 | 126 | 1 |
| OTU vs after mumu cleaning algorithm | 37868 | 122 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 99 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48726 | 129 | 1 |
| OTU after vsearch reclustering at 97% | 48726 | 118 | 1 |
| OTU vs after mumu cleaning algorithm | 48726 | 115 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 83 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31545 | 55 | 1 |
| OTU after vsearch reclustering at 97% | 31545 | 44 | 1 |
| OTU vs after mumu cleaning algorithm | 31545 | 44 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 35 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25525 | 122 | 1 |
| OTU after vsearch reclustering at 97% | 25525 | 106 | 1 |
| OTU vs after mumu cleaning algorithm | 25525 | 101 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 82 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 21 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 21 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 3826 | 45 | 1 |
| OTU after vsearch reclustering at 97% | 3826 | 45 | 1 |
| OTU vs after mumu cleaning algorithm | 3826 | 44 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37760 | 51 | 1 |
| OTU after vsearch reclustering at 97% | 37760 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 37760 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 24 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39588 | 65 | 1 |
| OTU after vsearch reclustering at 97% | 39588 | 42 | 1 |
| OTU vs after mumu cleaning algorithm | 39588 | 40 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 35 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37203 | 48 | 1 |
| OTU after vsearch reclustering at 97% | 37203 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 37203 | 37 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 33 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 772 | 17 | 1 |
| OTU after vsearch reclustering at 97% | 772 | 17 | 1 |
| OTU vs after mumu cleaning algorithm | 772 | 17 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38529 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 38529 | 41 | 1 |
| OTU vs after mumu cleaning algorithm | 38529 | 40 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38777 | 137 | 1 |
| OTU after vsearch reclustering at 97% | 38777 | 111 | 1 |
| OTU vs after mumu cleaning algorithm | 38777 | 110 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 80 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30071 | 155 | 1 |
| OTU after vsearch reclustering at 97% | 30071 | 139 | 1 |
| OTU vs after mumu cleaning algorithm | 30071 | 136 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 118 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 55777 | 70 | 1 |
| OTU after vsearch reclustering at 97% | 55777 | 45 | 1 |
| OTU vs after mumu cleaning algorithm | 55777 | 44 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29089 | 47 | 1 |
| OTU after vsearch reclustering at 97% | 29089 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 29089 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21045 | 85 | 1 |
| OTU after vsearch reclustering at 97% | 21045 | 68 | 1 |
| OTU vs after mumu cleaning algorithm | 21045 | 67 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 66 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1382 | 32 | 1 |
| OTU after vsearch reclustering at 97% | 1382 | 29 | 1 |
| OTU vs after mumu cleaning algorithm | 1382 | 27 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 64459 | 84 | 1 |
| OTU after vsearch reclustering at 97% | 64459 | 60 | 1 |
| OTU vs after mumu cleaning algorithm | 64459 | 60 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 45 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36092 | 80 | 1 |
| OTU after vsearch reclustering at 97% | 36092 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 36092 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37924 | 128 | 1 |
| OTU after vsearch reclustering at 97% | 37924 | 105 | 1 |
| OTU vs after mumu cleaning algorithm | 37924 | 104 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 84 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32106 | 84 | 1 |
| OTU after vsearch reclustering at 97% | 32106 | 77 | 1 |
| OTU vs after mumu cleaning algorithm | 32106 | 76 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 66 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26940 | 104 | 1 |
| OTU after vsearch reclustering at 97% | 26940 | 89 | 1 |
| OTU vs after mumu cleaning algorithm | 26940 | 89 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 77 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33337 | 55 | 1 |
| OTU after vsearch reclustering at 97% | 33337 | 47 | 1 |
| OTU vs after mumu cleaning algorithm | 33337 | 47 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 17375 | 51 | 1 |
| OTU after vsearch reclustering at 97% | 17375 | 42 | 1 |
| OTU vs after mumu cleaning algorithm | 17375 | 42 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 47979 | 124 | 1 |
| OTU after vsearch reclustering at 97% | 47979 | 92 | 1 |
| OTU vs after mumu cleaning algorithm | 47979 | 92 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 66 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 26 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 26 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32556 | 100 | 1 |
| OTU after vsearch reclustering at 97% | 32556 | 81 | 1 |
| OTU vs after mumu cleaning algorithm | 32556 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 71 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43361 | 114 | 1 |
| OTU after vsearch reclustering at 97% | 43361 | 81 | 1 |
| OTU vs after mumu cleaning algorithm | 43361 | 80 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 1 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 1 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33676 | 44 | 1 |
| OTU after vsearch reclustering at 97% | 33676 | 33 | 1 |
| OTU vs after mumu cleaning algorithm | 33676 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 29 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36653 | 65 | 1 |
| OTU after vsearch reclustering at 97% | 36653 | 53 | 1 |
| OTU vs after mumu cleaning algorithm | 36653 | 52 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 44 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30758 | 59 | 1 |
| OTU after vsearch reclustering at 97% | 30758 | 46 | 1 |
| OTU vs after mumu cleaning algorithm | 30758 | 45 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35935 | 76 | 1 |
| OTU after vsearch reclustering at 97% | 35935 | 49 | 1 |
| OTU vs after mumu cleaning algorithm | 35935 | 47 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26035 | 72 | 1 |
| OTU after vsearch reclustering at 97% | 26035 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 26035 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 22155 | 45 | 1 |
| OTU after vsearch reclustering at 97% | 22155 | 35 | 1 |
| OTU vs after mumu cleaning algorithm | 22155 | 35 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 29 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42328 | 97 | 1 |
| OTU after vsearch reclustering at 97% | 42328 | 71 | 1 |
| OTU vs after mumu cleaning algorithm | 42328 | 70 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1033 | 24 | 1 |
| OTU after vsearch reclustering at 97% | 1033 | 23 | 1 |
| OTU vs after mumu cleaning algorithm | 1033 | 22 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40604 | 82 | 1 |
| OTU after vsearch reclustering at 97% | 40604 | 69 | 1 |
| OTU vs after mumu cleaning algorithm | 40604 | 66 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 23180 | 89 | 1 |
| OTU after vsearch reclustering at 97% | 23180 | 62 | 1 |
| OTU vs after mumu cleaning algorithm | 23180 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46314 | 28 | 1 |
| OTU after vsearch reclustering at 97% | 46314 | 17 | 1 |
| OTU vs after mumu cleaning algorithm | 46314 | 17 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 17 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27252 | 111 | 1 |
| OTU after vsearch reclustering at 97% | 27252 | 106 | 1 |
| OTU vs after mumu cleaning algorithm | 27252 | 96 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 86 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33420 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 33420 | 62 | 1 |
| OTU vs after mumu cleaning algorithm | 33420 | 62 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 62 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35649 | 74 | 1 |
| OTU after vsearch reclustering at 97% | 35649 | 46 | 1 |
| OTU vs after mumu cleaning algorithm | 35649 | 46 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 42723 | 134 | 1 |
| OTU after vsearch reclustering at 97% | 42723 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 42723 | 89 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 59 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37596 | 85 | 1 |
| OTU after vsearch reclustering at 97% | 37596 | 50 | 1 |
| OTU vs after mumu cleaning algorithm | 37596 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41112 | 113 | 1 |
| OTU after vsearch reclustering at 97% | 41112 | 77 | 1 |
| OTU vs after mumu cleaning algorithm | 41112 | 77 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40718 | 86 | 1 |
| OTU after vsearch reclustering at 97% | 40718 | 50 | 1 |
| OTU vs after mumu cleaning algorithm | 40718 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46637 | 67 | 1 |
| OTU after vsearch reclustering at 97% | 46637 | 57 | 1 |
| OTU vs after mumu cleaning algorithm | 46637 | 55 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 45 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 34 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 34 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43301 | 88 | 1 |
| OTU after vsearch reclustering at 97% | 43301 | 66 | 1 |
| OTU vs after mumu cleaning algorithm | 43301 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39063 | 87 | 1 |
| OTU after vsearch reclustering at 97% | 39063 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 39063 | 65 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 54 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 11583 | 39 | 1 |
| OTU after vsearch reclustering at 97% | 11583 | 27 | 1 |
| OTU vs after mumu cleaning algorithm | 11583 | 26 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35315 | 112 | 1 |
| OTU after vsearch reclustering at 97% | 35315 | 101 | 1 |
| OTU vs after mumu cleaning algorithm | 35315 | 97 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 83 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34203 | 56 | 1 |
| OTU after vsearch reclustering at 97% | 34203 | 36 | 1 |
| OTU vs after mumu cleaning algorithm | 34203 | 36 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33488 | 84 | 1 |
| OTU after vsearch reclustering at 97% | 33488 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 33488 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45605 | 38 | 1 |
| OTU after vsearch reclustering at 97% | 45605 | 34 | 1 |
| OTU vs after mumu cleaning algorithm | 45605 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38766 | 144 | 1 |
| OTU after vsearch reclustering at 97% | 38766 | 112 | 1 |
| OTU vs after mumu cleaning algorithm | 38766 | 112 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 94 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45194 | 113 | 1 |
| OTU after vsearch reclustering at 97% | 45194 | 70 | 1 |
| OTU vs after mumu cleaning algorithm | 45194 | 68 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 627 | 17 | 1 |
| OTU after vsearch reclustering at 97% | 627 | 17 | 1 |
| OTU vs after mumu cleaning algorithm | 627 | 17 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 56952 | 52 | 1 |
| OTU after vsearch reclustering at 97% | 56952 | 30 | 1 |
| OTU vs after mumu cleaning algorithm | 56952 | 30 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 20 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 23291 | 7 | 1 |
| OTU after vsearch reclustering at 97% | 23291 | 4 | 1 |
| OTU vs after mumu cleaning algorithm | 23291 | 4 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 4 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38854 | 125 | 1 |
| OTU after vsearch reclustering at 97% | 38854 | 113 | 1 |
| OTU vs after mumu cleaning algorithm | 38854 | 110 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 84 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20795 | 48 | 1 |
| OTU after vsearch reclustering at 97% | 20795 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 20795 | 39 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41587 | 66 | 1 |
| OTU after vsearch reclustering at 97% | 41587 | 43 | 1 |
| OTU vs after mumu cleaning algorithm | 41587 | 42 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28849 | 103 | 1 |
| OTU after vsearch reclustering at 97% | 28849 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 28849 | 91 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 74 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30391 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 30391 | 47 | 1 |
| OTU vs after mumu cleaning algorithm | 30391 | 45 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37124 | 101 | 1 |
| OTU after vsearch reclustering at 97% | 37124 | 84 | 1 |
| OTU vs after mumu cleaning algorithm | 37124 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 57 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35911 | 72 | 1 |
| OTU after vsearch reclustering at 97% | 35911 | 53 | 1 |
| OTU vs after mumu cleaning algorithm | 35911 | 52 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1673 | 15 | 1 |
| OTU after vsearch reclustering at 97% | 1673 | 14 | 1 |
| OTU vs after mumu cleaning algorithm | 1673 | 14 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 51 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 51 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 51 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20327 | 108 | 1 |
| OTU after vsearch reclustering at 97% | 20327 | 99 | 1 |
| OTU vs after mumu cleaning algorithm | 20327 | 99 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 90 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35959 | 86 | 1 |
| OTU after vsearch reclustering at 97% | 35959 | 52 | 1 |
| OTU vs after mumu cleaning algorithm | 35959 | 51 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 38 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25858 | 72 | 1 |
| OTU after vsearch reclustering at 97% | 25858 | 48 | 1 |
| OTU vs after mumu cleaning algorithm | 25858 | 48 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28317 | 66 | 1 |
| OTU after vsearch reclustering at 97% | 28317 | 40 | 1 |
| OTU vs after mumu cleaning algorithm | 28317 | 40 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 30 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20333 | 57 | 1 |
| OTU after vsearch reclustering at 97% | 20333 | 40 | 1 |
| OTU vs after mumu cleaning algorithm | 20333 | 40 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 34 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27796 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 27796 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 27796 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39391 | 39 | 1 |
| OTU after vsearch reclustering at 97% | 39391 | 29 | 1 |
| OTU vs after mumu cleaning algorithm | 39391 | 29 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 22 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45036 | 50 | 1 |
| OTU after vsearch reclustering at 97% | 45036 | 32 | 1 |
| OTU vs after mumu cleaning algorithm | 45036 | 32 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39131 | 56 | 1 |
| OTU after vsearch reclustering at 97% | 39131 | 35 | 1 |
| OTU vs after mumu cleaning algorithm | 39131 | 35 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31428 | 65 | 1 |
| OTU after vsearch reclustering at 97% | 31428 | 57 | 1 |
| OTU vs after mumu cleaning algorithm | 31428 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 49 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32622 | 66 | 1 |
| OTU after vsearch reclustering at 97% | 32622 | 51 | 1 |
| OTU vs after mumu cleaning algorithm | 32622 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43714 | 59 | 1 |
| OTU after vsearch reclustering at 97% | 43714 | 46 | 1 |
| OTU vs after mumu cleaning algorithm | 43714 | 46 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27159 | 57 | 1 |
| OTU after vsearch reclustering at 97% | 27159 | 48 | 1 |
| OTU vs after mumu cleaning algorithm | 27159 | 48 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34346 | 73 | 1 |
| OTU after vsearch reclustering at 97% | 34346 | 51 | 1 |
| OTU vs after mumu cleaning algorithm | 34346 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28834 | 46 | 1 |
| OTU after vsearch reclustering at 97% | 28834 | 36 | 1 |
| OTU vs after mumu cleaning algorithm | 28834 | 36 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 30 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31094 | 32 | 1 |
| OTU after vsearch reclustering at 97% | 31094 | 23 | 1 |
| OTU vs after mumu cleaning algorithm | 31094 | 23 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 21 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48612 | 102 | 1 |
| OTU after vsearch reclustering at 97% | 48612 | 60 | 1 |
| OTU vs after mumu cleaning algorithm | 48612 | 58 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34759 | 64 | 1 |
| OTU after vsearch reclustering at 97% | 34759 | 54 | 1 |
| OTU vs after mumu cleaning algorithm | 34759 | 54 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40558 | 82 | 1 |
| OTU after vsearch reclustering at 97% | 40558 | 62 | 1 |
| OTU vs after mumu cleaning algorithm | 40558 | 60 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 55 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 179 | 9 | 1 |
| OTU after vsearch reclustering at 97% | 179 | 9 | 1 |
| OTU vs after mumu cleaning algorithm | 179 | 9 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36863 | 117 | 1 |
| OTU after vsearch reclustering at 97% | 36863 | 106 | 1 |
| OTU vs after mumu cleaning algorithm | 36863 | 101 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 85 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 78 | 2 | 1 |
| OTU after vsearch reclustering at 97% | 78 | 2 | 1 |
| OTU vs after mumu cleaning algorithm | 78 | 2 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 314 | 6 | 1 |
| OTU after vsearch reclustering at 97% | 314 | 5 | 1 |
| OTU vs after mumu cleaning algorithm | 314 | 5 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 23788 | 98 | 1 |
| OTU after vsearch reclustering at 97% | 23788 | 74 | 1 |
| OTU vs after mumu cleaning algorithm | 23788 | 74 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 70 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27320 | 100 | 1 |
| OTU after vsearch reclustering at 97% | 27320 | 80 | 1 |
| OTU vs after mumu cleaning algorithm | 27320 | 76 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 70 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48087 | 121 | 1 |
| OTU after vsearch reclustering at 97% | 48087 | 88 | 1 |
| OTU vs after mumu cleaning algorithm | 48087 | 85 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 65 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38946 | 72 | 1 |
| OTU after vsearch reclustering at 97% | 38946 | 52 | 1 |
| OTU vs after mumu cleaning algorithm | 38946 | 51 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 42 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26296 | 156 | 1 |
| OTU after vsearch reclustering at 97% | 26296 | 147 | 1 |
| OTU vs after mumu cleaning algorithm | 26296 | 144 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 114 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36851 | 122 | 1 |
| OTU after vsearch reclustering at 97% | 36851 | 101 | 1 |
| OTU vs after mumu cleaning algorithm | 36851 | 98 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 82 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33352 | 50 | 1 |
| OTU after vsearch reclustering at 97% | 33352 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 33352 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 28 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 67 | 2 | 1 |
| OTU after vsearch reclustering at 97% | 67 | 2 | 1 |
| OTU vs after mumu cleaning algorithm | 67 | 2 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39393 | 130 | 1 |
| OTU after vsearch reclustering at 97% | 39393 | 112 | 1 |
| OTU vs after mumu cleaning algorithm | 39393 | 110 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 94 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20242 | 88 | 1 |
| OTU after vsearch reclustering at 97% | 20242 | 78 | 1 |
| OTU vs after mumu cleaning algorithm | 20242 | 77 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 73 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 98 | 2 | 1 |
| OTU after vsearch reclustering at 97% | 98 | 2 | 1 |
| OTU vs after mumu cleaning algorithm | 98 | 2 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28716 | 64 | 1 |
| OTU after vsearch reclustering at 97% | 28716 | 49 | 1 |
| OTU vs after mumu cleaning algorithm | 28716 | 48 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 45 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19356 | 101 | 1 |
| OTU after vsearch reclustering at 97% | 19356 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 19356 | 90 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 72 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 40897 | 89 | 1 |
| OTU after vsearch reclustering at 97% | 40897 | 43 | 1 |
| OTU vs after mumu cleaning algorithm | 40897 | 43 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 39 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 425 | 15 | 1 |
| OTU after vsearch reclustering at 97% | 425 | 15 | 1 |
| OTU vs after mumu cleaning algorithm | 425 | 15 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 310 | 13 | 1 |
| OTU after vsearch reclustering at 97% | 310 | 13 | 1 |
| OTU vs after mumu cleaning algorithm | 310 | 13 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 1756 | 14 | 1 |
| OTU after vsearch reclustering at 97% | 1756 | 14 | 1 |
| OTU vs after mumu cleaning algorithm | 1756 | 14 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 372 | 8 | 1 |
| OTU after vsearch reclustering at 97% | 372 | 8 | 1 |
| OTU vs after mumu cleaning algorithm | 372 | 8 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38495 | 56 | 1 |
| OTU after vsearch reclustering at 97% | 38495 | 40 | 1 |
| OTU vs after mumu cleaning algorithm | 38495 | 40 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 28 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 510 | 9 | 1 |
| OTU after vsearch reclustering at 97% | 510 | 9 | 1 |
| OTU vs after mumu cleaning algorithm | 510 | 9 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 48 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 48 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 48 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35635 | 84 | 1 |
| OTU after vsearch reclustering at 97% | 35635 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 35635 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36406 | 132 | 1 |
| OTU after vsearch reclustering at 97% | 36406 | 112 | 1 |
| OTU vs after mumu cleaning algorithm | 36406 | 106 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 83 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31804 | 86 | 1 |
| OTU after vsearch reclustering at 97% | 31804 | 63 | 1 |
| OTU vs after mumu cleaning algorithm | 31804 | 61 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 7329 | 83 | 1 |
| OTU after vsearch reclustering at 97% | 7329 | 82 | 1 |
| OTU vs after mumu cleaning algorithm | 7329 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 79 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29413 | 149 | 1 |
| OTU after vsearch reclustering at 97% | 29413 | 130 | 1 |
| OTU vs after mumu cleaning algorithm | 29413 | 128 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 111 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37829 | 94 | 1 |
| OTU after vsearch reclustering at 97% | 37829 | 88 | 1 |
| OTU vs after mumu cleaning algorithm | 37829 | 84 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 63 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32192 | 112 | 1 |
| OTU after vsearch reclustering at 97% | 32192 | 106 | 1 |
| OTU vs after mumu cleaning algorithm | 32192 | 104 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 81 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25379 | 65 | 1 |
| OTU after vsearch reclustering at 97% | 25379 | 61 | 1 |
| OTU vs after mumu cleaning algorithm | 25379 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21661 | 40 | 1 |
| OTU after vsearch reclustering at 97% | 21661 | 33 | 1 |
| OTU vs after mumu cleaning algorithm | 21661 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 28 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28621 | 118 | 1 |
| OTU after vsearch reclustering at 97% | 28621 | 105 | 1 |
| OTU vs after mumu cleaning algorithm | 28621 | 103 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 83 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 9708 | 57 | 1 |
| OTU after vsearch reclustering at 97% | 9708 | 52 | 1 |
| OTU vs after mumu cleaning algorithm | 9708 | 52 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 49 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24791 | 61 | 1 |
| OTU after vsearch reclustering at 97% | 24791 | 51 | 1 |
| OTU vs after mumu cleaning algorithm | 24791 | 51 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26438 | 100 | 1 |
| OTU after vsearch reclustering at 97% | 26438 | 90 | 1 |
| OTU vs after mumu cleaning algorithm | 26438 | 89 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 76 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19922 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 19922 | 90 | 1 |
| OTU vs after mumu cleaning algorithm | 19922 | 90 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 84 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39245 | 56 | 1 |
| OTU after vsearch reclustering at 97% | 39245 | 40 | 1 |
| OTU vs after mumu cleaning algorithm | 39245 | 39 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 32 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34537 | 45 | 1 |
| OTU after vsearch reclustering at 97% | 34537 | 32 | 1 |
| OTU vs after mumu cleaning algorithm | 34537 | 31 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34406 | 55 | 1 |
| OTU after vsearch reclustering at 97% | 34406 | 44 | 1 |
| OTU vs after mumu cleaning algorithm | 34406 | 44 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 37 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 147 | 4 | 1 |
| OTU after vsearch reclustering at 97% | 147 | 4 | 1 |
| OTU vs after mumu cleaning algorithm | 147 | 3 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 190 | 3 | 1 |
| OTU after vsearch reclustering at 97% | 190 | 3 | 1 |
| OTU vs after mumu cleaning algorithm | 190 | 3 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33326 | 183 | 1 |
| OTU after vsearch reclustering at 97% | 33326 | 163 | 1 |
| OTU vs after mumu cleaning algorithm | 33326 | 154 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 121 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 405 | 4 | 1 |
| OTU after vsearch reclustering at 97% | 405 | 4 | 1 |
| OTU vs after mumu cleaning algorithm | 405 | 4 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35078 | 82 | 1 |
| OTU after vsearch reclustering at 97% | 35078 | 58 | 1 |
| OTU vs after mumu cleaning algorithm | 35078 | 55 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 45047 | 43 | 1 |
| OTU after vsearch reclustering at 97% | 45047 | 35 | 1 |
| OTU vs after mumu cleaning algorithm | 45047 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 26 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26959 | 127 | 1 |
| OTU after vsearch reclustering at 97% | 26959 | 114 | 1 |
| OTU vs after mumu cleaning algorithm | 26959 | 106 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 95 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26852 | 80 | 1 |
| OTU after vsearch reclustering at 97% | 26852 | 50 | 1 |
| OTU vs after mumu cleaning algorithm | 26852 | 49 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34130 | 79 | 1 |
| OTU after vsearch reclustering at 97% | 34130 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 34130 | 64 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 56 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30871 | 97 | 1 |
| OTU after vsearch reclustering at 97% | 30871 | 76 | 1 |
| OTU vs after mumu cleaning algorithm | 30871 | 76 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 64 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35555 | 99 | 1 |
| OTU after vsearch reclustering at 97% | 35555 | 78 | 1 |
| OTU vs after mumu cleaning algorithm | 35555 | 77 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 61 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 22005 | 62 | 1 |
| OTU after vsearch reclustering at 97% | 22005 | 50 | 1 |
| OTU vs after mumu cleaning algorithm | 22005 | 49 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31344 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 31344 | 74 | 1 |
| OTU vs after mumu cleaning algorithm | 31344 | 74 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 68 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41045 | 60 | 1 |
| OTU after vsearch reclustering at 97% | 41045 | 31 | 1 |
| OTU vs after mumu cleaning algorithm | 41045 | 31 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 25 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31011 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 31011 | 56 | 1 |
| OTU vs after mumu cleaning algorithm | 31011 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 34555 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 34555 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 34555 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 15814 | 58 | 1 |
| OTU after vsearch reclustering at 97% | 15814 | 54 | 1 |
| OTU vs after mumu cleaning algorithm | 15814 | 54 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 53 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26927 | 51 | 1 |
| OTU after vsearch reclustering at 97% | 26927 | 39 | 1 |
| OTU vs after mumu cleaning algorithm | 26927 | 39 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29791 | 78 | 1 |
| OTU after vsearch reclustering at 97% | 29791 | 57 | 1 |
| OTU vs after mumu cleaning algorithm | 29791 | 57 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38500 | 123 | 1 |
| OTU after vsearch reclustering at 97% | 38500 | 98 | 1 |
| OTU vs after mumu cleaning algorithm | 38500 | 96 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 82 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 39646 | 133 | 1 |
| OTU after vsearch reclustering at 97% | 39646 | 100 | 1 |
| OTU vs after mumu cleaning algorithm | 39646 | 100 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 84 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 559 | 6 | 1 |
| OTU after vsearch reclustering at 97% | 559 | 5 | 1 |
| OTU vs after mumu cleaning algorithm | 559 | 5 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 43684 | 64 | 1 |
| OTU after vsearch reclustering at 97% | 43684 | 45 | 1 |
| OTU vs after mumu cleaning algorithm | 43684 | 43 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 36 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28547 | 113 | 1 |
| OTU after vsearch reclustering at 97% | 28547 | 95 | 1 |
| OTU vs after mumu cleaning algorithm | 28547 | 85 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 64 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 7786 | 50 | 1 |
| OTU after vsearch reclustering at 97% | 7786 | 47 | 1 |
| OTU vs after mumu cleaning algorithm | 7786 | 47 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 45 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38415 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 38415 | 81 | 1 |
| OTU vs after mumu cleaning algorithm | 38415 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 65 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41258 | 71 | 1 |
| OTU after vsearch reclustering at 97% | 41258 | 57 | 1 |
| OTU vs after mumu cleaning algorithm | 41258 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 46 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37572 | 28 | 1 |
| OTU after vsearch reclustering at 97% | 37572 | 12 | 1 |
| OTU vs after mumu cleaning algorithm | 37572 | 12 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 12 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30591 | 22 | 1 |
| OTU after vsearch reclustering at 97% | 30591 | 13 | 1 |
| OTU vs after mumu cleaning algorithm | 30591 | 13 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 13 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31801 | 70 | 1 |
| OTU after vsearch reclustering at 97% | 31801 | 69 | 1 |
| OTU vs after mumu cleaning algorithm | 31801 | 67 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 52 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28671 | 11 | 1 |
| OTU after vsearch reclustering at 97% | 28671 | 10 | 1 |
| OTU vs after mumu cleaning algorithm | 28671 | 10 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 10 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29268 | 10 | 1 |
| OTU after vsearch reclustering at 97% | 29268 | 5 | 1 |
| OTU vs after mumu cleaning algorithm | 29268 | 5 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 5 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 393 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 393 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 393 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 38771 | 60 | 1 |
| OTU after vsearch reclustering at 97% | 38771 | 40 | 1 |
| OTU vs after mumu cleaning algorithm | 38771 | 39 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 29 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20571 | 83 | 1 |
| OTU after vsearch reclustering at 97% | 20571 | 77 | 1 |
| OTU vs after mumu cleaning algorithm | 20571 | 76 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 65 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20729 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 20729 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 20729 | 59 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 49 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 17866 | 83 | 1 |
| OTU after vsearch reclustering at 97% | 17866 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 17866 | 67 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 58 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 25067 | 111 | 1 |
| OTU after vsearch reclustering at 97% | 25067 | 88 | 1 |
| OTU vs after mumu cleaning algorithm | 25067 | 87 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 74 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 24545 | 63 | 1 |
| OTU after vsearch reclustering at 97% | 24545 | 41 | 1 |
| OTU vs after mumu cleaning algorithm | 24545 | 41 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 36 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 10928 | 43 | 1 |
| OTU after vsearch reclustering at 97% | 10928 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 10928 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 36 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 17903 | 96 | 1 |
| OTU after vsearch reclustering at 97% | 17903 | 86 | 1 |
| OTU vs after mumu cleaning algorithm | 17903 | 84 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 82 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33006 | 84 | 1 |
| OTU after vsearch reclustering at 97% | 33006 | 69 | 1 |
| OTU vs after mumu cleaning algorithm | 33006 | 69 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 57 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20 | 1 | 1 |
| OTU after vsearch reclustering at 97% | 20 | 1 | 1 |
| OTU vs after mumu cleaning algorithm | 20 | 1 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 29219 | 99 | 1 |
| OTU after vsearch reclustering at 97% | 29219 | 94 | 1 |
| OTU vs after mumu cleaning algorithm | 29219 | 93 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 84 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28242 | 132 | 1 |
| OTU after vsearch reclustering at 97% | 28242 | 113 | 1 |
| OTU vs after mumu cleaning algorithm | 28242 | 112 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 90 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36782 | 145 | 1 |
| OTU after vsearch reclustering at 97% | 36782 | 125 | 1 |
| OTU vs after mumu cleaning algorithm | 36782 | 124 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 98 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 20337 | 107 | 1 |
| OTU after vsearch reclustering at 97% | 20337 | 97 | 1 |
| OTU vs after mumu cleaning algorithm | 20337 | 96 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 88 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27803 | 120 | 1 |
| OTU after vsearch reclustering at 97% | 27803 | 105 | 1 |
| OTU vs after mumu cleaning algorithm | 27803 | 103 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 87 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 10514 | 88 | 1 |
| OTU after vsearch reclustering at 97% | 10514 | 81 | 1 |
| OTU vs after mumu cleaning algorithm | 10514 | 81 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 79 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26162 | 116 | 1 |
| OTU after vsearch reclustering at 97% | 26162 | 100 | 1 |
| OTU vs after mumu cleaning algorithm | 26162 | 100 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 81 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28422 | 112 | 1 |
| OTU after vsearch reclustering at 97% | 28422 | 101 | 1 |
| OTU vs after mumu cleaning algorithm | 28422 | 99 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 85 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 36430 | 99 | 1 |
| OTU after vsearch reclustering at 97% | 36430 | 80 | 1 |
| OTU vs after mumu cleaning algorithm | 36430 | 80 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 62 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 21441 | 117 | 1 |
| OTU after vsearch reclustering at 97% | 21441 | 100 | 1 |
| OTU vs after mumu cleaning algorithm | 21441 | 100 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 94 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 46352 | 138 | 1 |
| OTU after vsearch reclustering at 97% | 46352 | 108 | 1 |
| OTU vs after mumu cleaning algorithm | 46352 | 106 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 76 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32355 | 137 | 1 |
| OTU after vsearch reclustering at 97% | 32355 | 119 | 1 |
| OTU vs after mumu cleaning algorithm | 32355 | 118 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 97 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26052 | 124 | 1 |
| OTU after vsearch reclustering at 97% | 26052 | 114 | 1 |
| OTU vs after mumu cleaning algorithm | 26052 | 112 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 93 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30048 | 87 | 1 |
| OTU after vsearch reclustering at 97% | 30048 | 62 | 1 |
| OTU vs after mumu cleaning algorithm | 30048 | 61 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 57 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26292 | 68 | 1 |
| OTU after vsearch reclustering at 97% | 26292 | 52 | 1 |
| OTU vs after mumu cleaning algorithm | 26292 | 52 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 47 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35125 | 81 | 1 |
| OTU after vsearch reclustering at 97% | 35125 | 65 | 1 |
| OTU vs after mumu cleaning algorithm | 35125 | 65 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 48 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 33655 | 94 | 1 |
| OTU after vsearch reclustering at 97% | 33655 | 79 | 1 |
| OTU vs after mumu cleaning algorithm | 33655 | 79 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 65 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31613 | 104 | 1 |
| OTU after vsearch reclustering at 97% | 31613 | 82 | 1 |
| OTU vs after mumu cleaning algorithm | 31613 | 78 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 73 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32954 | 86 | 1 |
| OTU after vsearch reclustering at 97% | 32954 | 64 | 1 |
| OTU vs after mumu cleaning algorithm | 32954 | 62 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 49 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26939 | 107 | 1 |
| OTU after vsearch reclustering at 97% | 26939 | 99 | 1 |
| OTU vs after mumu cleaning algorithm | 26939 | 98 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 84 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 22255 | 39 | 1 |
| OTU after vsearch reclustering at 97% | 22255 | 34 | 1 |
| OTU vs after mumu cleaning algorithm | 22255 | 33 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 30 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27134 | 164 | 1 |
| OTU after vsearch reclustering at 97% | 27134 | 148 | 1 |
| OTU vs after mumu cleaning algorithm | 27134 | 144 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 131 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 41148 | 56 | 1 |
| OTU after vsearch reclustering at 97% | 41148 | 38 | 1 |
| OTU vs after mumu cleaning algorithm | 41148 | 38 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 31 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28303 | 100 | 1 |
| OTU after vsearch reclustering at 97% | 28303 | 67 | 1 |
| OTU vs after mumu cleaning algorithm | 28303 | 67 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 51 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 28161 | 139 | 1 |
| OTU after vsearch reclustering at 97% | 28161 | 117 | 1 |
| OTU vs after mumu cleaning algorithm | 28161 | 114 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 98 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 35302 | 106 | 1 |
| OTU after vsearch reclustering at 97% | 35302 | 98 | 1 |
| OTU vs after mumu cleaning algorithm | 35302 | 97 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 75 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32906 | 125 | 1 |
| OTU after vsearch reclustering at 97% | 32906 | 115 | 1 |
| OTU vs after mumu cleaning algorithm | 32906 | 113 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 94 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27938 | 67 | 1 |
| OTU after vsearch reclustering at 97% | 27938 | 50 | 1 |
| OTU vs after mumu cleaning algorithm | 27938 | 50 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 41 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 30310 | 58 | 1 |
| OTU after vsearch reclustering at 97% | 30310 | 34 | 1 |
| OTU vs after mumu cleaning algorithm | 30310 | 34 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 27 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 37112 | 68 | 1 |
| OTU after vsearch reclustering at 97% | 37112 | 48 | 1 |
| OTU vs after mumu cleaning algorithm | 37112 | 47 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 32828 | 103 | 1 |
| OTU after vsearch reclustering at 97% | 32828 | 91 | 1 |
| OTU vs after mumu cleaning algorithm | 32828 | 91 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 74 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 26190 | 71 | 1 |
| OTU after vsearch reclustering at 97% | 26190 | 48 | 1 |
| OTU vs after mumu cleaning algorithm | 26190 | 48 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 40 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19259 | 51 | 1 |
| OTU after vsearch reclustering at 97% | 19259 | 44 | 1 |
| OTU vs after mumu cleaning algorithm | 19259 | 44 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 43 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 27851 | 80 | 1 |
| OTU after vsearch reclustering at 97% | 27851 | 75 | 1 |
| OTU vs after mumu cleaning algorithm | 27851 | 74 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 67 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 17139 | 67 | 1 |
| OTU after vsearch reclustering at 97% | 17139 | 59 | 1 |
| OTU vs after mumu cleaning algorithm | 17139 | 56 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 50 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 0 | 10281 | 1 |
| OTU after vsearch reclustering at 97% | 0 | 4521 | 1 |
| OTU vs after mumu cleaning algorithm | 0 | 0 | 0 |
| OTU vs + mumu + rarefaction by sequencing depth | 0 | 0 | 0 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 31627 | 153 | 1 |
| OTU after vsearch reclustering at 97% | 31627 | 127 | 1 |
| OTU vs after mumu cleaning algorithm | 31627 | 125 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 101 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 19447 | 133 | 1 |
| OTU after vsearch reclustering at 97% | 19447 | 125 | 1 |
| OTU vs after mumu cleaning algorithm | 19447 | 109 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 96 | 1 |
| nb_sequences | nb_clusters | nb_samples | |
|---|---|---|---|
| ASV denoising | 95573 | 511 | 1 |
| OTU after vsearch reclustering at 97% | 95573 | 480 | 1 |
| OTU vs after mumu cleaning algorithm | 95573 | 480 | 1 |
| OTU vs + mumu + rarefaction by sequencing depth | 2000 | 344 | 1 |
krona(clean_pq(d_pq, simplify_taxo =TRUE), file = here::here("data/data_final/krona_nb_seq.html"))Cleaning suppress 0 taxa and 26 samples.
krona(clean_pq(d_pq, simplify_taxo =TRUE), nb_seq = FALSE, file = here::here("data/data_final/krona_nb_taxa.html"))Cleaning suppress 0 taxa and 26 samples.
Session information are detailed below. More information about the machine, the system, as well as python and R packages, are available in the file data_final/information_run.txt .
sessionInfo()R version 4.4.2 (2024-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Debian GNU/Linux 12 (bookworm)
Matrix products: default
BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.11.0
LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.11.0
locale:
[1] LC_CTYPE=fr_FR.UTF-8 LC_NUMERIC=C
[3] LC_TIME=fr_FR.UTF-8 LC_COLLATE=fr_FR.UTF-8
[5] LC_MONETARY=fr_FR.UTF-8 LC_MESSAGES=fr_FR.UTF-8
[7] LC_PAPER=fr_FR.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=fr_FR.UTF-8 LC_IDENTIFICATION=C
time zone: Europe/Paris
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices datasets utils methods base
other attached packages:
[1] MiscMetabar_0.10.1 purrr_1.0.2 dplyr_1.1.4 dada2_1.34.0
[5] Rcpp_1.0.13-1 ggplot2_3.5.1 phyloseq_1.50.0 targets_1.9.0
[9] knitr_1.49
loaded via a namespace (and not attached):
[1] bitops_1.0-9 deldir_2.0-4
[3] permute_0.9-7 rlang_1.1.4
[5] magrittr_2.0.3 ade4_1.7-22
[7] matrixStats_1.4.1 compiler_4.4.2
[9] mgcv_1.9-1 png_0.1-8
[11] callr_3.7.6 vctrs_0.6.5
[13] reshape2_1.4.4 autometric_0.1.2
[15] stringr_1.5.1 pwalign_1.2.0
[17] pkgconfig_2.0.3 crayon_1.5.3
[19] fastmap_1.2.0 backports_1.5.0
[21] XVector_0.46.0 labeling_0.4.3
[23] utf8_1.2.4 Rsamtools_2.22.0
[25] rmarkdown_2.29 UCSC.utils_1.2.0
[27] ps_1.8.1 xfun_0.49
[29] cachem_1.1.0 zlibbioc_1.52.0
[31] GenomeInfoDb_1.42.1 jsonlite_1.8.9
[33] biomformat_1.34.0 rhdf5filters_1.18.0
[35] DelayedArray_0.32.0 Rhdf5lib_1.28.0
[37] BiocParallel_1.40.0 jpeg_0.1-10
[39] parallel_4.4.2 cluster_2.1.6
[41] R6_2.5.1 bslib_0.8.0
[43] RColorBrewer_1.1-3 stringi_1.8.4
[45] jquerylib_0.1.4 GenomicRanges_1.58.0
[47] SummarizedExperiment_1.36.0 iterators_1.0.14
[49] IRanges_2.40.0 Matrix_1.7-1
[51] splines_4.4.2 igraph_2.1.1
[53] tidyselect_1.2.1 rstudioapi_0.17.1
[55] abind_1.4-8 yaml_2.3.10
[57] vegan_2.6-8 codetools_0.2-20
[59] hwriter_1.3.2.1 processx_3.8.4
[61] lattice_0.22-6 tibble_3.2.1
[63] plyr_1.8.9 Biobase_2.66.0
[65] withr_3.0.2 ShortRead_1.64.0
[67] evaluate_1.0.1 survival_3.7-0
[69] RcppParallel_5.1.9 Biostrings_2.74.0
[71] pillar_1.9.0 BiocManager_1.30.25
[73] MatrixGenerics_1.18.0 DT_0.33
[75] renv_1.0.11 foreach_1.5.2
[77] stats4_4.4.2 generics_0.1.3
[79] rprojroot_2.0.4 S4Vectors_0.44.0
[81] munsell_0.5.1 scales_1.3.0
[83] base64url_1.4 glue_1.8.0
[85] tools_4.4.2 interp_1.1-6
[87] data.table_1.16.2 GenomicAlignments_1.42.0
[89] visNetwork_2.1.2 rhdf5_2.50.0
[91] grid_4.4.2 ape_5.8
[93] crosstalk_1.2.1 latticeExtra_0.6-30
[95] colorspace_2.1-1 nlme_3.1-166
[97] GenomeInfoDbData_1.2.13 cli_3.6.3
[99] fansi_1.0.6 viridisLite_0.4.2
[101] S4Arrays_1.6.0 gtable_0.3.6
[103] sass_0.4.9 digest_0.6.37
[105] BiocGenerics_0.52.0 SparseArray_1.6.0
[107] farver_2.1.2 htmlwidgets_1.6.4
[109] htmltools_0.5.8.1 multtest_2.62.0
[111] lifecycle_1.0.4 here_1.0.1
[113] httr_1.4.7 secretbase_1.0.3
[115] MASS_7.3-61
@online{taudière2024,
author = {Taudière, Adrien},
title = {Bioinformatics Pipeline Summary},
date = {2024-12-03},
langid = {en}
}